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tdbR00000084

NameValue
Coding AA: Phe
Anticodon sequence: #AA
Organism: Saccharomyces cerevisiae NCBI:txid4932
RNA type: cytoplasmic
Sequence: GCGGACUUALCUCAGDDGGGAGAGCRCCAGABU#AAYAP?UGGAG7UC?UGUGTPCG"UCCACAGAGUUCGCACCA
Unmodified sequence: GCGGACUUAGCUCAGUUGGGAGAGCGCCAGACUGAAGAUCUGGAGGUCCUGUGUUCGAUCCACAGAGUUCGCACCA
Secondary structure: (((((((..((((........)))).(((((.......))))).....(((((.......))))))))))))....
Homology model or
structure extracted from PDB:		 Model Download (by RNA Composer) (last update July 2, 2025)
Prepared by: Database creators
Version: 1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: June 29, 2026
Folding free energy [kcal/mol]: -24.70
Pre-aligned sequence:
Pre-aligned secondary structure:		 -GCGGACUUALCUCAGDD-GGG--AGAGCRCCAGABU#AAYAP?UGGAG-------------------7UC?UGUGTPCG"UCCACAGAGUUCGCACCA
.(((((((..((((...........)))).(((((.......)))))........................(((((.......))))))))))))....
Publications:
  • Evidence for the existence of an expressed minor variant tRNAPhe in yeast.
    G Keith, G Dirheimer
    Biochemical and biophysical research communications
    volume: 142 issue: 1 date: Jan. 15, 1987 PUBMED ID: 3545201

Aminoacylation

NameValue
Positive identity elements regulating aminoacylation: A73; G20; G34; A35; A36; A37; tertiary nucleotides
Negative identity elements antideterminants of aminoacylation: NA
Citation: Sampson,J.R., DiRenzo,A.B., Behlen,L.S. and Uhlenbeck,O.C. (1990) Role of the tertiary nucleotides in the interaction of yeast phenylalanine tRNA with its cognate synthetase. Biochemistry, 29, 2523–2532.
DOI: 10.1021/bi00462a014
PMID: 2334680

Secondary structure

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Tertiary structure

Model based on:
RNA Composer