tdbR00000503

Name	Value
Coding AA:	Ini
Anticodon sequence:	CAU
Organism:	Thermoplasma acidophilum NCBI:txid2303
RNA type:	cytoplasmic
Sequence:	AGCGGGGUGGGGPAGUCAGGAAAUCCLAUGGGBUCAUAACCCGUAGAUCGAUGGPPBH"AUCCAUCCCCCGCUACCA
Unmodified sequence:	AGCGGGGUGGGGUAGUCAGGAAAUCCGAUGGGCUCAUAACCCGUAGAUCGAUGGUUCAAAUCCAUCCCCCGCUACCA
Secondary structure:	(((((((..((((.........)))).(((((.......))))).....(((((.......))))))))))))....
Homology model or structure extracted from PDB:	Model Download (by Moderna) Download (by RNA Composer) (last update July 2, 2025)
Prepared by:	Database creators
Version:	1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: July 2, 2025
Folding free energy [kcal/mol]:	-25.90
Pre-aligned sequence: Pre-aligned secondary structure:	-AGCGGGGUGGGGPAGUCAGGA--AAUCCLAUGGGBUCAUAACCCGUAG-------------------AUCGAUGGPPBH"AUCCAUCCCCCGCUACCA .(((((((..((((...........)))).(((((.......)))))........................(((((.......))))))))))))....
Publications:	Initiator tRNAs from archaebacteria show common unique sequence characteristics. Y Kuchino, M Ihara, Y Yabusaki, S Nishimura Nature volume: 298 issue: 5875 date: Aug. 12, 1982 PUBMED ID: 6178978
Comments:	32 PARTIALLY C; 57 H IS PROBABLY I

Model based on:

Moderna

RNA Composer