tdbR00000272

NameValue
Coding AA: Met
Anticodon sequence: CAU
Organism: Thermoplasma acidophilum NCBI:txid2303
RNA type: cytoplasmic
Sequence: GCCGGGG4GGCUCA(CUGGAGGAGCRCCGGABUCAU6AUCCGGAGGUCUCGGGPPBGAUCCCCGAUCCCGGCACCA
Unmodified sequence: GCCGGGGUGGCUCAGCUGGAGGAGCGCCGGACUCAUAAUCCGGAGGUCUCGGGUUCGAUCCCCGAUCCCGGCACCA
Secondary structure: (((((((..((((........)))).(((((.......))))).....(((((.......))))))))))))....
Homology model or
structure extracted from PDB:		 Model Download (last update Sept. 6, 2019)
Prepared by: Database creators
Version: 1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: Sept. 23, 2019
Folding free energy [kcal/mol]: -32.20
Pre-aligned sequence:
Pre-aligned secondary structure:		 -GCCGGGG4GGCUCA(CU-GGA--GGAGCRCCGGABUCAU6AUCCGGAG-------------------GUCUCGGGPPBGAUCCCCGAUCCCGGCACCA
.(((((((..((((...........)))).(((((.......)))))........................(((((.......))))))))))))....
Publications:
  • The nucleotide sequence of the tRNAMMet from the archaebacterium Thermoplasma acidophilum.
    M W Kilpatrick, R T Walker
    Nucleic acids research
    volume: 9 issue: 17 date: Sept. 11, 1981 PUBMED ID: 6913864
  • Structure of the archaeal transfer RNA nucleoside G*-15 (2-amino-4,7-dihydro- 4-oxo-7-beta-D-ribofuranosyl-1H-pyrrolo[2,3-d]pyrimidine-5-carboximi dam ide (archaeosine)).
    J M Gregson, P F Crain, C G Edmonds, R Gupta, T Hashizume, D W Phillipson, J A McCloskey
    The Journal of biological chemistry
    volume: 268 issue: 14 date: May 15, 1993 PUBMED ID: 7683667
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