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tdbR00000157

NameValue
Coding AA: Ile
Anticodon sequence: GAU
Organism: Thermus thermophilus NCBI:txid274
RNA type: cytoplasmic
Sequence: GGGCGAUUAGCUCAGCU#GUDAGAGCGCACGCCUGAU6AGCGUGAG7UCGGUGGFPCA"GUCCACCAUCGCCCACCA
Unmodified sequence: GGGCGAUUAGCUCAGCUGGUUAGAGCGCACGCCUGAUAAGCGUGAGGUCGGUGGUUCAAGUCCACCAUCGCCCACCA
Secondary structure: (((((((..((((.........)))).(((((.......))))).....(((((.......))))))))))))....
Homology model or
structure extracted from PDB:		 Model Download (by Moderna) Download (by RNA Composer) (last update July 2, 2025)
Prepared by: Database creators
Version: 1 (Sept. 6, 2019), created: Feb. 25, 2019, modified: June 29, 2026
Folding free energy [kcal/mol]: -30.80
Pre-aligned sequence:
Pre-aligned secondary structure:		 -GGGCGAUUAGCUCAGCU-#GUD-AGAGCGCACGCCUGAU6AGCGUGAG-------------------7UCGGUGGFPCA"GUCCACCAUCGCCCACCA
.(((((((..((((...........)))).(((((.......)))))........................(((((.......))))))))))))....
Publications:
  • Two tRNAIle1 species from an extreme thermophile, Thermus thermophilus HB8: effect of 2-thiolation of ribothymidine on the thermostability of tRNA.
    N Horie, M Hara-Yokoyama, S Yokoyama, K Watanabe, Y Kuchino, S Nishimura, T Miyazawa
    Biochemistry
    volume: 24 issue: 21 date: Oct. 8, 1985 PUBMED ID: 3853464
Comments: 54 PARTIALLY T

Aminoacylation

NameValue
Positive identity elements regulating aminoacylation: A73; anticodon determinants; D-loop/acceptor context
Negative identity elements antideterminants of aminoacylation: NA
Citation: Nureki,O., Niimi,T., Muramatsu,T., Kanno,H., Kohno,T., Florentz,C., Gieg´e,R. and Yokoyama,S. (1994) Molecular recognition of the identity-determinant set of isoleucine transfer RNA from Escherichia coli. J. Mol. Biol., 236, 710–724.
DOI: 10.1006/jmbi.1994.1184
PMID: 8114089

Secondary structure

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Tertiary structure

Model based on:
Moderna
RNA Composer