tdbR00000661

Name	Value
Coding AA:	Cys
Anticodon sequence:	GCA
Organism:	Homo sapiens NCBI:txid9606
RNA type:	cytoplasmic
Sequence:	GGGGGUAUAGCUCAGGGGUAGAGCACUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCAGGUGCCCCCUCCA
Unmodified sequence:	GGGGGUAUAGCUCAGGGGUAGAGCACUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCAGGUGCCCCCUCCA
Secondary structure:	(((((((..((((.......)))).(((((.......))))).....(((((.......))))))))))))....
Homology model or structure extracted from PDB:	Model Download (by RNA Composer) (last update July 2, 2025)
Prepared by:	Database creators
Version:	1 (Sept. 6, 2019), created: May 30, 2019, modified: July 2, 2025
Folding free energy [kcal/mol]:	-27.30
Pre-aligned sequence: Pre-aligned secondary structure:	-GGGGGUAUAGCUCAGG--GGU--AGAGCACUUGACUGCAGAUCAAGAG-------------------GUCCCUGGUUCAAAUCCAGGUGCCCCCUCCA .(((((((..((((...........)))).(((((.......)))))........................(((((.......))))))))))))....
Publications:	Characterizing Expression and Processing of Precursor and Mature Human tRNAs by Hydro-tRNAseq and PAR-CLIP. Tasos Gogakos, Miguel Brown, Aitor Garzia, Cindy Meyer, Markus Hafner, Thomas Tuschl Cell reports volume: 20 issue: 6 date: Aug. 8, 2017 PUBMED ID: 28793268 DOI: 10.1016/j.celrep.2017.07.029
Comments:	Sequence obtained from hydro-tRNAseq; modified nucleosides were not determined by MS, only predicted by mismatches frequency; relative abundance among tRNACys in HEK293 cells: 1.1%

Model based on:

RNA Composer