tdbR00000674

Name	Value
Coding AA:	Phe
Anticodon sequence:	GAA
Organism:	Homo sapiens NCBI:txid9606
RNA type:	cytoplasmic
Sequence:	GCCGA;AUAGCUCAGUUGGGAGAGCGUUAGACUGAAGAUCUAAAGGNCCCUGGUUCHAUCCCGGGUUUCGGCACCA
Unmodified sequence:	GCCGAGAUAGCUCAGUUGGGAGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCAAUCCCGGGUUUCGGCACCA
Secondary structure:	(((((((..((((........)))).(((((.......))))).....(((((.......))))))))))))....
Homology model or structure extracted from PDB:	Model Download (by Moderna) Download (by RNA Composer) (last update Sept. 6, 2019)
Prepared by:	Database creators
Version:	1 (Sept. 6, 2019), created: May 30, 2019, modified: Nov. 15, 2024
Folding free energy [kcal/mol]:	-22.00
Pre-aligned sequence: Pre-aligned secondary structure:	-GCCGA;AUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAG-------------------GNCCCUGGUUCHAUCCCGGGUUUCGGCACCA .(((((((..((((...........)))).(((((.......)))))........................(((((.......))))))))))))....
Publications:	Characterizing Expression and Processing of Precursor and Mature Human tRNAs by Hydro-tRNAseq and PAR-CLIP. Tasos Gogakos, Miguel Brown, Aitor Garzia, Cindy Meyer, Markus Hafner, Thomas Tuschl Cell reports volume: 20 issue: 6 date: Aug. 8, 2017 PUBMED ID: 28793268 DOI: 10.1016/j.celrep.2017.07.029
Comments:	Sequence obtained from hydro-tRNAseq; modified nucleosides were not determined by MS, only predicted by mismatches frequency; relative abundance among tRNAPhe in HEK293 cells: 16.4%

Model based on:

Moderna

RNA Composer