tdbR00000819

Name	Value
Coding AA:	Val
Anticodon sequence:	IAC
Organism:	Homo sapiens NCBI:txid9606
RNA type:	cytoplasmic
Sequence:	GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUIACACGCGAAAGGUCCCUGGAUCAAAACCAGGCGGAAACACCA
Unmodified sequence:	GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUAACACGCGAAAGGUCCCUGGAUCAAAACCAGGCGGAAACACCA
Secondary structure:	(((((((..(((..........))).(((((.......))))).....(((((.......))))))))))))....
Homology model or structure extracted from PDB:	Model Download (last update Sept. 6, 2019)
Prepared by:	Database creators
Version:	1 (Sept. 6, 2019), created: May 30, 2019, modified: Sept. 23, 2019
Folding free energy [kcal/mol]:	-21.10
Pre-aligned sequence: Pre-aligned secondary structure:	-GUUUCCGUAGUGUAGU--GGUU-AUCACGUUCGCCUIACACGCGAAAG-------------------GUCCCUGGAUCAAAACCAGGCGGAAACACCA .(((((((..(((.............))).(((((.......)))))........................(((((.......))))))))))))....
Publications:	Characterizing Expression and Processing of Precursor and Mature Human tRNAs by Hydro-tRNAseq and PAR-CLIP. Tasos Gogakos, Miguel Brown, Aitor Garzia, Cindy Meyer, Markus Hafner, Thomas Tuschl Cell reports volume: 20 issue: 6 date: Aug. 8, 2017 PUBMED ID: 28793268 DOI: S2211-1247(17)30995-6 Inosine modifications in human tRNAs are incorporated at the precursor tRNA level. Adrian Gabriel Torres, David Piñeyro, Marta Rodríguez-Escribà, Noelia Camacho, Oscar Reina, Adélaïde Saint-Léger, Liudmila Filonava, Eduard Batlle, Lluís Ribas de Pouplana Nucleic acids research volume: 43 issue: 10 date: May 26, 2015 epub: April 27, 2015 PUBMED ID: 25916855 DOI: 10.1093/nar/gkv277
Comments:	Sequence obtained from hydro-tRNAseq; modified nucleosides were not determined by MS, only predicted by mismatches frequency; relative abundance among tRNAVal in HEK293 cells:1.6%