tdbR00000853

Name	Value
Coding AA:	Leu
Anticodon sequence:	AAG
Organism:	Schizosaccharomyces pombe NCBI:txid4896
RNA type:	cytoplasmic
Sequence:	GGAAGGUUGUCCGAGUGGUUAUGGARCUAGUUUAAGGCACUAGUGCGAAAGCUCGUGGGUUCGAGUCCCACACCUUUCACCA
Unmodified sequence:	GGAAGGUUGUCCGAGUGGUUAUGGAGCUAGUUUAAGGCACUAGUGCGAAAGCUCGUGGGUUCGAGUCCCACACCUUUCACCA
Secondary structure:	(((((((..((((........))))((((((.......))))))..........(((((.......))))))))))))....
Homology model or structure extracted from PDB:	Model Download (by Moderna) Download (by RNA Composer) (last update July 2, 2025)
Prepared by:	Database creators
Version:	1 (Sept. 6, 2019), created: May 30, 2019, modified: July 2, 2025
Folding free energy [kcal/mol]:	-21.40
Pre-aligned sequence: Pre-aligned secondary structure:	-GGAAGGUUGUCCGAGU--GGUU-AUGGAGCUAGUUUAAGGCACUAGUGC-------GAAA------GCUCGUGGGUUCGAGUCCCACACCUUUCACCA .(((((((..((((...........))))((((((.......)))))).......................(((((.......))))))))))))....
Publications:	RNA Polymerase III Output Is Functionally Linked to tRNA Dimethyl-G26 Modification. Aneeshkumar G Arimbasseri, Nathan H Blewett, James R Iben, Tek N Lamichhane, Vera Cherkasova, Markus Hafner, Richard J Maraia PLoS genetics volume: 11 issue: 12 epub: Dec. 31, 2015 PUBMED ID: 26720005 DOI: e1005671
Comments:	Sequence obtained from hydro-tRNAseq; only single modification studied; 26 partially modified

Model based on:

Moderna

RNA Composer