tdbR00000864

Name	Value
Coding AA:	Ser
Anticodon sequence:	AGA
Organism:	Schizosaccharomyces pombe NCBI:txid4896
RNA type:	cytoplasmic
Sequence:	GACACUAUGCCUGAGUGGUUAAAGGRACAGA'UAGA+AUCUGUUGCGGUCUCCGCGCGCAGGUUCAAAUCCUGCUGGUGUCGCCA
Unmodified sequence:	GACACUAUGCCUGAGUGGUUAAAGGGACAGACUAGAAAUCUGUUGCGGUCUCCGCGCGCAGGUUCAAAUCCUGCUGGUGUCGCCA
Secondary structure:	(((((((..(((..........)))((((((.......)))))).............(((((.......))))))))))))....
Homology model or structure extracted from PDB:	Model Download (last update Sept. 6, 2019)
Prepared by:	Database creators
Version:	1 (Sept. 6, 2019), created: May 30, 2019, modified: Sept. 23, 2019
Folding free energy [kcal/mol]:	-22.50
Pre-aligned sequence: Pre-aligned secondary structure:	-GACACUAUGCCUGAGU--GGUU-AAAGGRACAGA'UAGA+AUCUGUUGCGG-----UCU-----CCGCGCGCAGGUUCAAAUCCUGCUGGUGUCGCCA .(((((((..(((.............)))((((((.......)))))).......................(((((.......))))))))))))....
Publications:	RNA Polymerase III Output Is Functionally Linked to tRNA Dimethyl-G26 Modification. Aneeshkumar G Arimbasseri, Nathan H Blewett, James R Iben, Tek N Lamichhane, Vera Cherkasova, Markus Hafner, Richard J Maraia PLoS genetics volume: 11 issue: 12 epub: Dec. 31, 2015 PUBMED ID: 26720005 DOI: 10.1371/journal.pgen.1005671 Plasticity and diversity of tRNA anticodon determinants of substrate recognition by eukaryotic A37 isopentenyltransferases. Tek N Lamichhane, Nathan H Blewett, Richard J Maraia RNA (New York, N.Y.) volume: 17 issue: 10 epub: Aug. 26, 2011 PUBMED ID: 21873461 DOI: 10.1261/rna.2628611 Evolving specificity of tRNA 3-methyl-cytidine-32 (m3C32) modification: a subset of tRNAsSer requires N6-isopentenylation of A37. Aneeshkumar G Arimbasseri, James Iben, Fan-Yan Wei, Keshab Rijal, Kazuhito Tomizawa, Markus Hafner, Richard J Maraia RNA (New York, N.Y.) volume: 22 issue: 9 epub: June 27, 2016 PUBMED ID: 27354703 DOI: 10.1261/rna.056259.116
Comments:	Sequence obtained from hydro-tRNAseq, only two modification studied, 26 partially modified; 32 partially modified