tdbR00000871

Name	Value
Coding AA:	Trp
Anticodon sequence:	CCA
Organism:	Schizosaccharomyces pombe NCBI:txid4896
RNA type:	cytoplasmic
Sequence:	GGCCCCUUAACUCAGUUGGUAGAGURUGAGAUUCCAAAUCUCAAAGUCAAGUGUUCAAGUCACUUAGGGGUCACCA
Unmodified sequence:	GGCCCCUUAACUCAGUUGGUAGAGUGUGAGAUUCCAAAUCUCAAAGUCAAGUGUUCAAGUCACUUAGGGGUCACCA
Secondary structure:	(((((((..((((........)))).(((((.......))))).....(((((.......))))))))))))....
Homology model or structure extracted from PDB:	Model Download (last update Sept. 6, 2019)
Prepared by:	Database creators
Version:	1 (Sept. 6, 2019), created: May 30, 2019, modified: Sept. 23, 2019
Folding free energy [kcal/mol]:	-21.90
Pre-aligned sequence: Pre-aligned secondary structure:	-GGCCCCUUAACUCAGUU-GGU--AGAGUGUGAGAUUCCAAAUCUCAAA-------------------GUCAAGUGUUCAAGUCACUUAGGGGUCACCA .(((((((..((((...........)))).(((((.......)))))........................(((((.......))))))))))))....
Publications:	RNA Polymerase III Output Is Functionally Linked to tRNA Dimethyl-G26 Modification. Aneeshkumar G Arimbasseri, Nathan H Blewett, James R Iben, Tek N Lamichhane, Vera Cherkasova, Markus Hafner, Richard J Maraia PLoS genetics volume: 11 issue: 12 epub: Dec. 31, 2015 PUBMED ID: 26720005 DOI: 10.1371/journal.pgen.1005671
Comments:	Sequence obtained from hydro-tRNAseq; only single modification studied; 26 partially modified