tdbR00000886

NameValue
Coding AA: Ile
Anticodon sequence: ¿AU
Organism: Hoaloarcula marismortui NCBI:txid2238
RNA type: cytoplasmic
Sequence: GGGCCCUUAGCUUA(UCUGGUUAAGCRAUCGGCU¿AU6ACCGAUUGAG?GCUGG]PBOAAUCCGGCAGGGCCCACCA
Unmodified sequence: GGGCCCUUAGCUUAGUCUGGUUAAGCGAUCGGCUCAUAACCGAUUGAGCGCUGGUUCAAAUCCGGCAGGGCCCACCA
Secondary structure: (((((((..((((.........)))).(((((.......))))).....(((((.......))))))))))))....
Homology model or
structure extracted from PDB:
Model Download (last update Sept. 6, 2019)
Prepared by: Database creators
Version: 1 (Sept. 6, 2019), created: May 30, 2019, modified: Sept. 23, 2019
Folding free energy [kcal/mol]: -28.30
Pre-aligned sequence:
Pre-aligned secondary structure:
-GGGCCCUUAGCUUA(UC-UGG-UUAAGCRAUCGGCU¿AU6ACCGAUUG-------------------AG?GCUGG]PBOAAUCCGGCAGGGCCCACCA
.(((((((..((((...........)))).(.(((.......))).)........................(((((.......))))))))))))....
Publications:
  • Agmatine-conjugated cytidine in a tRNA anticodon is essential for AUA decoding in archaea.
    Yoshiho Ikeuchi, Satoshi Kimura, Tomoyuki Numata, Daigo Nakamura, Takashi Yokogawa, Toshihiko Ogata, Takeshi Wada, Takeo Suzuki, Tsutomu Suzuki
    Nature chemical biology
    volume: 6 issue: 4 epub: Feb. 7, 2010 PUBMED ID: 20139989 DOI: 10.1038/nchembio.323
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