tdbR00000887

NameValue
Coding AA: Ile
Anticodon sequence: PAP
Organism: Saccharomyces cerevisiae NCBI:txid4932
RNA type: cytoplasmic
Sequence: GCUCGUGUALCUCAGDGGDDAGAGCUPCGUGCUPAP6ACGCGACC7D?GUGGGTPCA"ACCCCACCPCGAGCACCA
Unmodified sequence: GCUCGUGUAGCUCAGUGGUUAGAGCUUCGUGCUUAUAACGCGACCGUCGUGGGUUCAAACCCCACCUCGAGCACCA
Secondary structure: (((((.(..((((........)))).(((((.......))))).....(((((.......)))))).)))))....
Homology model or
structure extracted from PDB:
Model Download (last update Sept. 6, 2019)
Prepared by: Database creators
Version: 1 (Sept. 6, 2019), created: May 30, 2019, modified: Sept. 23, 2019
Folding free energy [kcal/mol]: -23.30
Pre-aligned sequence:
Pre-aligned secondary structure:
-GCUCGUGUALCUCAGD--GGDD-AGAGCUPCGUGCUPAP6ACGCGACC-------------------7D?GUGGGTPCA"UCCCCACCPCGAGCACCA
.(((((.(..((((...........)))).(((((.......)))))........................(((((.......)))))).)))))....
Publications:
  • Precise analysis of modification status at various stage of tRNA maturation in Saccharomyces cerevisiae.
    Takayuki Ohira, Kenjyo Miyauchi, Yuriko Sakaguchi, Takeo Suzuki, Tsutomu Suzuki
    Nucleic acids symposium series
    issue: 53 PUBMED ID: 19749380 DOI: 10.1093/nass/nrp151
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