tdbR00000889

NameValue
Coding AA: Lys
Anticodon sequence: CUU
Organism: Mesocentrotus nudus NCBI:txid7666
RNA type: cytoplasmic
Sequence: CCUUAAUU"LCUUAUUUAAAGCCUUAAACUCUU«AUUUAAAAGAAAAUAGCUAAUACCUAUUAUUAAGGACCA
Unmodified sequence: CCUUAAUUAGCUUAUUUAAAGCCUUAAACUCUUAAUUUAAAAGAAAAUAGCUAAUACCUAUUAUUAAGGACCA
Secondary structure: (((((((..((((.....)))).(((((.......))))).....(((((.......))))))))))))....
Homology model or
structure extracted from PDB:
Model Download (last update Sept. 6, 2019)
Prepared by: Database creators
Version: 1 (Sept. 6, 2019), created: May 30, 2019, modified: Sept. 23, 2019
Folding free energy [kcal/mol]: -6.40
Pre-aligned sequence:
Pre-aligned secondary structure:
-CCUUAAUU"LCUUAUUU------AAAGCCUUAAACUCUU«AUUUAAAA-------------------GAAAAUAGCUAAUACCUAUUAUUAAGGACCA
.(((((((..((((...........))))..((((.......)))).........................(((((.......))))))))))))....
Publications:
  • Hydroxylation of a conserved tRNA modification establishes non-universal genetic code in echinoderm mitochondria.
    Asuteka Nagao, Mitsuhiro Ohara, Kenjyo Miyauchi, Shin-Ichi Yokobori, Akihiko Yamagishi, Kimitsuna Watanabe, Tsutomu Suzuki
    Nature structural & molecular biology
    volume: 24 issue: 9 epub: Aug. 7, 2017 PUBMED ID: 28783151 DOI: 10.1038/nsmb.3449
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