tdbR00000889

Name	Value
Coding AA:	Lys
Anticodon sequence:	CUU
Organism:	Mesocentrotus nudus NCBI:txid7666
RNA type:	cytoplasmic
Sequence:	CCUUAAUU"LCUUAUUUAAAGCCUUAAACUCUU«AUUUAAAAGAAAAUAGCUAAUACCUAUUAUUAAGGACCA
Unmodified sequence:	CCUUAAUUAGCUUAUUUAAAGCCUUAAACUCUUAAUUUAAAAGAAAAUAGCUAAUACCUAUUAUUAAGGACCA
Secondary structure:	(((((((..((((.....)))).(((((.......))))).....(((((.......))))))))))))....
Homology model or structure extracted from PDB:	Model Download (by Moderna) Download (by RNA Composer) (last update July 2, 2025)
Prepared by:	Database creators
Version:	1 (Sept. 6, 2019), created: May 30, 2019, modified: July 2, 2025
Folding free energy [kcal/mol]:	-6.40
Pre-aligned sequence: Pre-aligned secondary structure:	-CCUUAAUU"LCUUAUUU------AAAGCCUUAAACUCUU«AUUUAAAA-------------------GAAAAUAGCUAAUACCUAUUAUUAAGGACCA .(((((((..((((...........))))..((((.......)))).........................(((((.......))))))))))))....
Publications:	Hydroxylation of a conserved tRNA modification establishes non-universal genetic code in echinoderm mitochondria. Asuteka Nagao, Mitsuhiro Ohara, Kenjyo Miyauchi, Shin-Ichi Yokobori, Akihiko Yamagishi, Kimitsuna Watanabe, Tsutomu Suzuki Nature structural & molecular biology volume: 24 issue: 9 epub: Aug. 7, 2017 PUBMED ID: 28783151 DOI: 10.1038/nsmb.3449

Model based on:

Moderna

RNA Composer