tdbR00000890

NameValue
Coding AA: Pro
Anticodon sequence: υGG
Organism: Escherichia coli NCBI:txid562
RNA type: cytoplasmic
Sequence: CGGCGAGUAGCGCAGCUUGGDAGCGCAACUGGUUυGGKACCAGUGG7UCGGAGGTPCGAAUCCUCUCUCGCCGACCA
Unmodified sequence: CGGCGAGUAGCGCAGCUUGGUAGCGCAACUGGUUUGGGACCAGUGGGUCGGAGGUUCGAAUCCUCUCUCGCCGACCA
Secondary structure: (((((((..((((.........)))).(((((.......))))).....(((((.......))))))))))))....
Homology model or
structure extracted from PDB:
Model Download (last update Sept. 6, 2019)
Prepared by: Database creators
Version: 1 (Sept. 6, 2019), created: May 30, 2019, modified: Sept. 23, 2019
Folding free energy [kcal/mol]: -28.90
Pre-aligned sequence:
Pre-aligned secondary structure:
CGGCGAGUAGCGCAGCUUGGUAGCGCAACUGGUUUGGGACCAGUGGGUCGGAGGUUCGAAUCCUCUCUCGCCGACCA
-CGGCGAGUAGCGCAGCUUGGD--AGCGCAACUGGUUυGGKACCAGUGG-------------------7UCGGAGGTPCGAAUCCUCUCUCGCCGACCA
Publications:
  • Selective terminal methylation of a tRNA wobble base.
    Isao Masuda, Ryuichi Takase, Ryuma Matsubara, Mellie June Paulines, Howard Gamper, Patrick A Limbach, Ya-Ming Hou
    Nucleic acids research
    volume: 46 issue: 7 date: April 20, 2018 PUBMED ID: 29361055 DOI: 10.1093/nar/gky013
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