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tdbR00000891

NameValue
Coding AA: Thr
Anticodon sequence: VGU
Organism: Escherichia coli NCBI:txid562
RNA type: cytoplasmic
Sequence: GCCGACUUAGCUCAGUAGGDDAGAGCAACUGABUVGU6AUCAGUAG7UCACCAGTPCGAUUCCGGUAGUCGGCACCA
Unmodified sequence: GCCGACUUAGCUCAGUAGGUUAGAGCAACUGACUUGUAAUCAGUAGGUCACCAGUUCGAUUCCGGUAGUCGGCACCA
Secondary structure: (((((((..((((.........)))).(((((.......))))).....(((.(.......).))))))))))....
Homology model or
structure extracted from PDB:		 Model Download (by Moderna) Download (by RNA Composer) (last update July 2, 2025)
Prepared by: Database creators
Version: 1 (Sept. 6, 2019), created: May 30, 2019, modified: June 29, 2026
Folding free energy [kcal/mol]: -20.60
Pre-aligned sequence:
Pre-aligned secondary structure:		 -GCCGACUUAGCUCAGUA--GGUUAGAGCAACUGACUUGUAAUCAGUAGGUC-------------------ACCAGUUCGAUUCCGGUAGUCGGCACCA
.(((((((..((((...........)))).(((((.......)))))........................(((.(.......).))))))))))....
Publications:
  • The wobble hypothesis revisited: uridine-5-oxyacetic acid is critical for reading of G-ending codons.
    S Joakim Näsvall, Peng Chen, Glenn R Björk
    RNA (New York, N.Y.)
    volume: 13 issue: 12 epub: Oct. 17, 2007 PUBMED ID: 17942742

Aminoacylation

NameValue
Positive identity elements regulating aminoacylation: G1-C72; C2-G71; G4-C69; G5-C68; G34; G35; U36
Negative identity elements antideterminants of aminoacylation: NA
Citation: Hasegawa,T., Miyano,M., Himeno,H., Sano,Y., Kimura,K. and Shimizu,M. (1992) Identity determinants of E. coli threonine tRNA. Biochem. Biophys Res. Commun., 184, 478–484.
DOI: 10.1016/0006-291X(92)91219-G
PMID: 1567450

Secondary structure

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Tertiary structure

Model based on:
Moderna
RNA Composer