tdbR00000978

Name	Value
Coding AA:	Leu
Anticodon sequence:	&AG
Organism:	Thermoplasma acidophilum NCBI:txid2303
RNA type:	cytoplasmic
Sequence:	GCGGAGG44GUC(A(ACUGGCCAAAGGCRAUGGAUU&AGKGPCCAUUCCCGAAGGGGUUC7AGGGPPBA"AUCCCUCCCUCCGCACCA
Unmodified sequence:	GCGGAGGUUGUCGAGACUGGCCAAAGGCGAUGGAUUUAGGGUCCAUUCCCGAAGGGGUUCGAGGGUUCAAAUCCCUCCCUCCGCACCA
Secondary structure:	(((((((..(((.............)))((((((.......)))))).............(((((.......))))))))))))....
Homology model or structure extracted from PDB:	Model Download (by Moderna) Download (by RNA Composer) (last update July 2, 2025)
Prepared by:	Database creators
Version:	1 (Sept. 6, 2019), created: May 30, 2019, modified: July 2, 2025
Folding free energy [kcal/mol]:	-27.10
Pre-aligned sequence: Pre-aligned secondary structure:	-GCGGAGG44GUC(A(ACUGGCCAAAGGCRAUGGAUU&AGKGPCCAUU-CCC----GAAG-----GGGUUC7AGGGPPBA"AUCCCUCCCUCCGCACCA .(((((((..(((.............)))((((((.......)))))).......................(((((.......))))))))))))....
Publications:	Distinct tRNA modifications in the thermo-acidophilic archaeon, Thermoplasma acidophilum. Chie Tomikawa, Takayuki Ohira, Yasushi Inoue, Takuya Kawamura, Akihiko Yamagishi, Tsutomu Suzuki, Hiroyuki Hori FEBS letters volume: 587 issue: 21 date: Nov. 1, 2013 epub: Sept. 25, 2013 PUBMED ID: 24076028 DOI: 10.1016/j.febslet.2013.09.021

Model based on:

Moderna

RNA Composer