tdbR00000980

Name	Value
Coding AA:	Lys
Anticodon sequence:	3UU
Organism:	Trypanosoma brucei NCBI:txid5691
RNA type:	cytoplasmic
Sequence:	GCCUUCCUALCUCAGDGGXAGAGCRCACGGBU3UUÿACCGUGUG7Ð?GUGGGTPCGAUCCCCACGGAAGGCGCCA
Unmodified sequence:	GCCUUCCUAGCUCAGUGGUAGAGCGCACGGCUUUUAACCGUGUGGUCGUGGGUUCGAUCCCCACGGAAGGCGCCA
Secondary structure:	(((((((..((((.......))))((((((.......))))))....(((((.......))))))))))))....
Homology model or structure extracted from PDB:	Model Download (by Moderna) Download (by RNA Composer) (last update July 2, 2025)
Prepared by:	Database creators
Version:	1 (Sept. 6, 2019), created: May 30, 2019, modified: July 2, 2025
Folding free energy [kcal/mol]:	-32.90
Pre-aligned sequence: Pre-aligned secondary structure:	-GCCUUCCUALCUCAG-D-GGX--AGAGCRCACGGBU3UUÿACCGUGUG-------------------7Ð?GUGGGTPCGAUCCCCACGGAAGGCGCCA .(((((((..((((...........))))((((((.......)))))).......................(((((.......))))))))))))....
Publications:	Identification of 2-methylthio cyclic N6-threonylcarbamoyladenosine (ms2ct6A) as a novel RNA modification at position 37 of tRNAs. Byeong-Il Kang, Kenjyo Miyauchi, Michal Matuszewski, Gabriel Silveira D'Almeida, Mary Anne T Rubio, Juan D Alfonzo, Kazuki Inoue, Yuriko Sakaguchi, Takeo Suzuki, Elzbieta Sochacka, Tsutomu Suzuki Nucleic acids research volume: 45 issue: 4 date: Feb. 28, 2017 PUBMED ID: 27913733 DOI: 10.1093/nar/gkw1120

Model based on:

Moderna

RNA Composer